quark.sh: line 159: 95129 Segmentation fault $decoder $inputdir $out S
reading Ns buffer with command plzip -d -c -n 1 m_.nlocs.lz reading offset buffer with command plzip -d -c -n 1 m_.offs.lz reading seq buffer with command plzip -d -c -n 17 m_.seqs.lz I fixed the error by replacing an old version of spdlog. I think this is caused by the version of spdlog. home/yuansliu/Data/quark/include/SailfishIndexVersionInfo.hpp:4:28: fatal error: spdlog/fmt/fmt.h: No such file or directory In file included from /home/yuansliu/Data/quark/include/SailfishIndex.hpp:16:0,įrom /home/yuansliu/Data/quark/src/SailfishIndexer.cpp:62: Building CXX object src/CMakeFiles/sailfish_core.dir/Ĭd /home/yuansliu/Data/quark/build/src & /opt/rh/devtoolset-4/root/usr/bin/c++ -pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -g -std=c++11 -Wreturn-type -Werror=return-type -static-libstdc++ -Wno-deprecated-register -Wno-unused-local-typedefs -I/home/yuansliu/Data/quark/tests -I/home/yuansliu/Data/quark/include -I/home/yuansliu/Data/quark/include/eigen3 -I/home/yuansliu/Data/quark/external -I/home/yuansliu/Data/quark/external/cereal/include -I/home/yuansliu/Data/quark/external/install/include -I/home/yuansliu/Data/quark/external/install/include/rapmap -I/home/yuansliu/Data/quark/external/install/include/jellyfish-2.2.3 -o CMakeFiles/sailfish_core.dir/ -c /home/yuansliu/Data/quark/src/SailfishIndexer.cpp Then I make, there is an error as following. Build files have been written to: /home/yuansliu/Data/quark/build TBB_LIBRARIES = /usr/lib64/libtbb.so /usr/lib64/libtbbmalloc.soīoost_LIBRARIES = /usr/lib64/libboost_iostreams-mt.a /usr/lib64/libboost_filesystem-mt.a /usr/lib64/libboost_system-mt.a /usr/lib64/libboost_thread-mt.a /usr/lib64/libboost_timer-mt.a /usr/lib64/libboost_chrono-mt.a /usr/lib64/libboost_program_options-mt.a /usr/lib64/libboost_serialization-mt.a Found ZLIB: /usr/lib64/libz.so (found version "1.2.7")īOOST LIBRAREIS = /usr/lib64/libboost_iostreams-mt.a /usr/lib64/libboost_filesystem-mt.a /usr/lib64/libboost_system-mt.a /usr/lib64/libboost_thread-mt.a /usr/lib64/libboost_timer-mt.a /usr/lib64/libboost_chrono-mt.a /usr/lib64/libboost_program_options-mt.a /usr/lib64/libboost_serialization-mt.a Check for working CXX compiler: /opt/rh/devtoolset-4/root/usr/bin/c++ - works Check for working CXX compiler: /opt/rh/devtoolset-4/root/usr/bin/c++ Check for working C compiler: /opt/rh/devtoolset-4/root/usr/bin/cc - works Check for working C compiler: /opt/rh/devtoolset-4/root/usr/bin/cc
The CXX compiler identification is GNU 5.3.1 The C compiler identification is GNU 5.3.1
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